IL_6SGC_192
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6SGC|1|A1|U|368, 6SGC|1|A1|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_192 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.2952
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37738.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|A1|U|366
6SGC|1|A1|U|367
6SGC|1|A1|U|368
6SGC|1|A1|C|369
6SGC|1|A1|G|370
6SGC|1|A1|A|371
*
6SGC|1|A1|U|393
6SGC|1|A1|G|394
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain J1
- 40S ribosomal protein S8
- Chain M1
- Ribosomal protein S11
- Chain R2
- eL19
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