IL_6SGC_196

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6SGC|1|A1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_196 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.1046

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SGC|1|A1|U|487
6SGC|1|A1|U|488
6SGC|1|A1|A|489
*
6SGC|1|A1|U|511
6SGC|1|A1|A|512

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24