IL_6SGC_200
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_200 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1449
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6SGC|1|A1|G|563
6SGC|1|A1|A|564
6SGC|1|A1|G|565
*
6SGC|1|A1|C|585
6SGC|1|A1|G|586
6SGC|1|A1|A|587
6SGC|1|A1|G|588
6SGC|1|A1|G|589
6SGC|1|A1|A|590
6SGC|1|A1|U|591
6SGC|1|A1|C|592
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain f1
- 40S ribosomal protein S30
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