IL_6SGC_202

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6SGC|1|A1|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|A|599
6SGC|1|A1|G|600
6SGC|1|A1|G|601
6SGC|1|A1|G|602
6SGC|1|A1|C|603
6SGC|1|A1|A|604
6SGC|1|A1|A|605
6SGC|1|A1|G|606
6SGC|1|A1|U|607
6SGC|1|A1|C|608
*
6SGC|1|A1|G|635
6SGC|1|A1|C|636
6SGC|1|A1|U|637

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain D1

uS5

Chain E1

uS5

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12

Chain f1

40S ribosomal protein S30