IL_6SGC_204

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_204 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1308

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6SGC|1|A1|C|663
6SGC|1|A1|A|664
6SGC|1|A1|G|665
*
6SGC|1|A1|C|1162
6SGC|1|A1|C|1163
6SGC|1|A1|G|1164

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain D1

uS5

Chain Y1

uS12