IL_6SGC_215

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6SGC|1|A1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_215 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1092

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6SGC|1|A1|G|924
6SGC|1|A1|G|925
6SGC|1|A1|A|926
6SGC|1|A1|C|927
*
6SGC|1|A1|G|1014
6SGC|1|A1|U|1015
6SGC|1|A1|U|1016
6SGC|1|A1|U|1017
6SGC|1|A1|U|1018

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

Ribosomal_S13_N domain-containing protein

Chain c1

40S ribosomal protein S27