IL_6SGC_221

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_221 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.0722

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6SGC|1|A1|C|1047
6SGC|1|A1|G|1048
6SGC|1|A1|A|1049
6SGC|1|A1|A|1050
6SGC|1|A1|G|1051
*
6SGC|1|A1|C|1067
6SGC|1|A1|G|1068
6SGC|1|A1|U|1069
6SGC|1|A1|A|1070
6SGC|1|A1|G|1071

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain A2

Ribosomal protein L8

Chain P1

uS11

Chain b1

eS26