IL_6SGC_230
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_230 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.0906
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6SGC|1|A1|C|1230
6SGC|1|A1|C|1231
6SGC|1|A1|U|1232
*
6SGC|1|A1|G|1526
6SGC|1|A1|C|1527
6SGC|1|A1|G|1528
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain Q1
- uS19
- Chain R1
- Ribosomal protein S16
- Chain T1
- eS13
- Chain U1
- eS19
- Chain V1
- Ribosomal_S10 domain-containing protein
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