IL_6SGC_248
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_248 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.0711
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SGC|1|A1|G|1604
6SGC|1|A1|G|1605
6SGC|1|A1|G|1606
6SGC|1|A1|A|1607
6SGC|1|A1|U|1608
6SGC|1|A1|C|1609
6SGC|1|A1|G|1610
*
6SGC|1|A1|C|1629
6SGC|1|A1|A|1630
6SGC|1|A1|U|1631
6SGC|1|A1|G|1632
6SGC|1|A1|A|1633
6SGC|1|A1|A|1634
6SGC|1|A1|C|1635
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain G1
- Ribosomal protein S5
- Chain T1
- eS13
- Chain U1
- eS19
Coloring options: