IL_6SGC_264

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

6SGC|1|54|G|1359, 6SGC|1|54|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|1357
6SGC|1|54|G|1358
6SGC|1|54|G|1359
6SGC|1|54|G|1360
6SGC|1|54|G|1361
*
6SGC|1|54|C|1376
6SGC|1|54|G|1377
6SGC|1|54|C|1378
6SGC|1|54|C|1379
6SGC|1|54|G|1380
6SGC|1|54|U|1381
6SGC|1|54|G|1382

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain L2

eL13

Chain N2

Ribosomal protein L15

Chain a2

Ribosomal_L18e/L15P domain-containing protein