IL_6SGC_265

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_265 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0587

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6SGC|1|54|G|2847
6SGC|1|54|G|2848
6SGC|1|54|A|2849
6SGC|1|54|A|2850
6SGC|1|54|G|2851
6SGC|1|54|U|2852
6SGC|1|54|C|2853
6SGC|1|54|G|2854
6SGC|1|54|G|2855
*
6SGC|1|54|C|3837
6SGC|1|54|U|3838
6SGC|1|54|G|3839
6SGC|1|54|U|3840
6SGC|1|54|C|3841

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain V2

Ribosomal protein L23