IL_6SGC_273

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6SGC|1|A1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_273 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.3511

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6SGC|1|A1|G|925
6SGC|1|A1|A|926
*
6SGC|1|A1|U|1015
6SGC|1|A1|U|1016
6SGC|1|A1|U|1017

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

Ribosomal_S13_N domain-containing protein

Chain c1

40S ribosomal protein S27