IL_6SGC_278

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGUAGAAUAAGUG*CACUAC

Length

21 nucleotides

Bulged bases

6SGC|1|54|G|3961, 6SGC|1|54|A|3962, 6SGC|1|54|A|3963, 6SGC|1|54|A|3965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|G|3955
6SGC|1|54|G|3956
6SGC|1|54|U|3957
6SGC|1|54|G|3958
6SGC|1|54|U|3959
6SGC|1|54|A|3960
6SGC|1|54|G|3961
6SGC|1|54|A|3962
6SGC|1|54|A|3963
6SGC|1|54|U|3964
6SGC|1|54|A|3965
6SGC|1|54|A|3966
6SGC|1|54|G|3967
6SGC|1|54|U|3968
6SGC|1|54|G|3969
*
6SGC|1|54|C|4052
6SGC|1|54|A|4053
6SGC|1|54|C|4054
6SGC|1|54|U|4055
6SGC|1|54|A|4056
6SGC|1|54|C|4057

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain B

Ribosomal protein