IL_6SJ6_001

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_001 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.1253

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SJ6|1|A|G|24
6SJ6|1|A|U|25
6SJ6|1|A|G|26
6SJ6|1|A|G|27
6SJ6|1|A|A|28
6SJ6|1|A|U|29
6SJ6|1|A|G|30
*
6SJ6|1|A|C|555
6SJ6|1|A|U|556
6SJ6|1|A|G|557
6SJ6|1|A|A|558
6SJ6|1|A|A|559
6SJ6|1|A|A|560
6SJ6|1|A|C|561

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain T

50S ribosomal protein L20

Chain V

50S ribosomal protein L22