IL_6SJ6_007

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_007 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1283

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6SJ6|1|A|C|241
6SJ6|1|A|U|242
6SJ6|1|A|U|243
6SJ6|1|A|A|244
6SJ6|1|A|G|245
6SJ6|1|A|U|246
6SJ6|1|A|A|247
6SJ6|1|A|G|248
*
6SJ6|1|A|C|256
6SJ6|1|A|G|257
6SJ6|1|A|A|258
6SJ6|1|A|A|259
6SJ6|1|A|A|260
6SJ6|1|A|C|261
6SJ6|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15