IL_6SJ6_015

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6SJ6|1|A|G|846, 6SJ6|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_015 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.1538

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6SJ6|1|A|G|719
6SJ6|1|A|A|720
6SJ6|1|A|A|721
6SJ6|1|A|A|722
6SJ6|1|A|C|723
*
6SJ6|1|A|G|844
6SJ6|1|A|A|845
6SJ6|1|A|G|846
6SJ6|1|A|A|847
6SJ6|1|A|U|848
6SJ6|1|A|A|849
6SJ6|1|A|G|850
6SJ6|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15