IL_6SJ6_019

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCG*CAAUC

Length

8 nucleotides

Bulged bases

6SJ6|1|A|A|833, 6SJ6|1|A|A|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_019 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.1435

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6SJ6|1|A|G|820
6SJ6|1|A|C|821
6SJ6|1|A|G|822
*
6SJ6|1|A|C|832
6SJ6|1|A|A|833
6SJ6|1|A|A|834
6SJ6|1|A|U|835
6SJ6|1|A|C|836

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2

Chain V

50S ribosomal protein L22