IL_6SJ6_036
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SJ6_036 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.1073
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SJ6|1|A|G|1300
6SJ6|1|A|U|1301
6SJ6|1|A|G|1302
6SJ6|1|A|A|1303
6SJ6|1|A|G|1304
6SJ6|1|A|U|1305
6SJ6|1|A|A|1306
6SJ6|1|A|G|1307
*
6SJ6|1|A|U|2038
6SJ6|1|A|G|2039
6SJ6|1|A|A|2040
6SJ6|1|A|A|2041
6SJ6|1|A|A|2042
6SJ6|1|A|U|2043
6SJ6|1|A|C|2044
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L22
Coloring options: