IL_6SJ6_040

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUGAGG*CGUAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_040 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2758

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SJ6|1|A|C|1393
6SJ6|1|A|U|1394
6SJ6|1|A|G|1395
6SJ6|1|A|A|1396
6SJ6|1|A|G|1397
6SJ6|1|A|G|1398
*
6SJ6|1|A|C|1407
6SJ6|1|A|G|1408
6SJ6|1|A|U|1409
6SJ6|1|A|A|1410
6SJ6|1|A|G|1411
6SJ6|1|A|G|1412

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2