IL_6SJ6_051

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAAUUCCUUGUCG*CGACCCG

Length

22 nucleotides

Bulged bases

6SJ6|1|A|A|1964, 6SJ6|1|A|A|1965, 6SJ6|1|A|U|1966, 6SJ6|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|C|1961
6SJ6|1|A|G|1962
6SJ6|1|A|A|1963
6SJ6|1|A|A|1964
6SJ6|1|A|A|1965
6SJ6|1|A|U|1966
6SJ6|1|A|U|1967
6SJ6|1|A|C|1968
6SJ6|1|A|C|1969
6SJ6|1|A|U|1970
6SJ6|1|A|U|1971
6SJ6|1|A|G|1972
6SJ6|1|A|U|1973
6SJ6|1|A|C|1974
6SJ6|1|A|G|1975
*
6SJ6|1|A|C|1985
6SJ6|1|A|G|1986
6SJ6|1|A|A|1987
6SJ6|1|A|C|1988
6SJ6|1|A|C|1989
6SJ6|1|A|C|1990
6SJ6|1|A|G|1991

Current chains

Chain A

23S ribosomal RNA

Nearby chains