IL_6SJ6_057
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CCGC*GGG
- Length
- 7 nucleotides
- Bulged bases
- 6SJ6|1|A|G|2230
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SJ6_057 not in the Motif Atlas
- Geometric match to IL_5UNE_001
- Geometric discrepancy: 0.296
- The information below is about IL_5UNE_001
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_44465.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
6SJ6|1|A|C|2228
6SJ6|1|A|C|2229
6SJ6|1|A|G|2230
6SJ6|1|A|C|2231
*
6SJ6|1|A|G|2247
6SJ6|1|A|G|2248
6SJ6|1|A|G|2249
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain D
- 50S ribosomal protein L2
Coloring options: