3D structure

PDB id
6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
CCGC*GGG
Length
7 nucleotides
Bulged bases
6SJ6|1|A|G|2230
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SJ6_057 not in the Motif Atlas
Geometric match to IL_5UNE_001
Geometric discrepancy: 0.296
The information below is about IL_5UNE_001
Detailed Annotation
Isolated non-canonical cWW contact
Broad Annotation
No text annotation
Motif group
IL_44465.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
9

Unit IDs

6SJ6|1|A|C|2228
6SJ6|1|A|C|2229
6SJ6|1|A|G|2230
6SJ6|1|A|C|2231
*
6SJ6|1|A|G|2247
6SJ6|1|A|G|2248
6SJ6|1|A|G|2249

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L28
Chain D
50S ribosomal protein L2

Coloring options:


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