IL_6SJ6_065

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCAAGA*UCGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_065 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3666

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SJ6|1|A|C|2493
6SJ6|1|A|C|2494
6SJ6|1|A|A|2495
6SJ6|1|A|A|2496
6SJ6|1|A|G|2497
6SJ6|1|A|A|2498
*
6SJ6|1|A|U|2506
6SJ6|1|A|C|2507
6SJ6|1|A|G|2508
6SJ6|1|A|A|2509
6SJ6|1|A|C|2510
6SJ6|1|A|G|2511

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16