IL_6SJ6_085

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_085 not in the Motif Atlas

Geometric match to IL_5IBB_340

Geometric discrepancy: 0.2826

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6SJ6|1|B|A|82
6SJ6|1|B|C|83
*
6SJ6|1|B|G|88
6SJ6|1|B|U|89
6SJ6|1|B|U|90

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16

Chain Y

50S ribosomal protein L25