IL_6SJ6_093

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUC*GAAC

Length

7 nucleotides

Bulged bases

6SJ6|1|A|A|809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_093 not in the Motif Atlas

Geometric match to IL_4PDQ_004

Geometric discrepancy: 0.2027

The information below is about IL_4PDQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6SJ6|1|A|G|741
6SJ6|1|A|U|742
6SJ6|1|A|C|743
*
6SJ6|1|A|G|808
6SJ6|1|A|A|809
6SJ6|1|A|A|810
6SJ6|1|A|C|811

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2