Loop IL_6SJ6

3D structure

PDB id: 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.23 Å

Loop

Sequence: GGAAAAGGAUGUGGCGUUG*UGACACUGCGCCGAAAAUGUACCGGGGC
Length: 47 nucleotides
Bulged bases: 6SJ6|1|A|A|1070, 6SJ6|1|A|U|1085, 6SJ6|1|A|A|1171, 6SJ6|1|A|U|1174, 6SJ6|1|A|C|1178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SJ6|1|A|G|1068
6SJ6|1|A|G|1069
6SJ6|1|A|A|1070
6SJ6|1|A|A|1071
6SJ6|1|A|A|1072
6SJ6|1|A|A|1073
6SJ6|1|A|G|1074
6SJ6|1|A|G|1075
6SJ6|1|A|A|1076
6SJ6|1|A|U|1077
6SJ6|1|A|G|1078
6SJ6|1|A|U|1079
6SJ6|1|A|G|1080
6SJ6|1|A|G|1081
6SJ6|1|A|C|1082
6SJ6|1|A|G|1083
6SJ6|1|A|U|1084
6SJ6|1|A|U|1085
6SJ6|1|A|G|1086
*
6SJ6|1|A|U|1157
6SJ6|1|A|G|1158
6SJ6|1|A|A|1159
6SJ6|1|A|C|1160
6SJ6|1|A|A|1161
6SJ6|1|A|C|1162
6SJ6|1|A|U|1163
6SJ6|1|A|G|1164
6SJ6|1|A|C|1165
6SJ6|1|A|G|1166
6SJ6|1|A|C|1167
6SJ6|1|A|C|1168
6SJ6|1|A|G|1169
6SJ6|1|A|A|1170
6SJ6|1|A|A|1171
6SJ6|1|A|A|1172
6SJ6|1|A|A|1173
6SJ6|1|A|U|1174
6SJ6|1|A|G|1175
6SJ6|1|A|U|1176
6SJ6|1|A|A|1177
6SJ6|1|A|C|1178
6SJ6|1|A|C|1179
6SJ6|1|A|G|1180
6SJ6|1|A|G|1181
6SJ6|1|A|G|1182
6SJ6|1|A|G|1183
6SJ6|1|A|C|1184

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain E: 50S ribosomal protein L3
Chain M: 50S ribosomal protein L13
Chain P: 50S ribosomal protein L16
Chain Y: 50S ribosomal protein L25

IL_6SJ6_098