IL_6SJ6_107

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAU*GUACG

Length

8 nucleotides

Bulged bases

6SJ6|1|A|A|2599, 6SJ6|1|A|C|2600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_107 not in the Motif Atlas

Geometric match to IL_7VFT_005

Geometric discrepancy: 0.3663

The information below is about IL_7VFT_005

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_00627.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

24

Unit IDs

6SJ6|1|A|C|2539
6SJ6|1|A|A|2540
6SJ6|1|A|U|2541
*
6SJ6|1|A|G|2597
6SJ6|1|A|U|2598
6SJ6|1|A|A|2599
6SJ6|1|A|C|2600
6SJ6|1|A|G|2601

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L13