IL_6SJ6_121

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAUGG*UCUAG

Length

11 nucleotides

Bulged bases

6SJ6|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_121 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.3403

The information below is about IL_1U6B_002

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6SJ6|1|A|C|1461
6SJ6|1|A|G|1462
6SJ6|1|A|A|1463
6SJ6|1|A|U|1464
6SJ6|1|A|G|1465
6SJ6|1|A|G|1466
*
6SJ6|1|A|U|1623
6SJ6|1|A|C|1624
6SJ6|1|A|U|1625
6SJ6|1|A|A|1626
6SJ6|1|A|G|1627

Current chains

Chain A

23S ribosomal RNA

Nearby chains