IL_6SKF_013

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAUUAG*CGAAGAUC

Length

14 nucleotides

Bulged bases

6SKF|1|Aa|U|232, 6SKF|1|Aa|A|268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|230
6SKF|1|Aa|A|231
6SKF|1|Aa|U|232
6SKF|1|Aa|U|233
6SKF|1|Aa|A|234
6SKF|1|Aa|G|235
*
6SKF|1|Aa|C|265
6SKF|1|Aa|G|266
6SKF|1|Aa|A|267
6SKF|1|Aa|A|268
6SKF|1|Aa|G|269
6SKF|1|Aa|A|270
6SKF|1|Aa|U|271
6SKF|1|Aa|C|272

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ak

30S ribosomal protein S8e

Chain Ao

30S ribosomal protein S12

Chain As

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA