IL_6SKF_027

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)GUAG*UGAGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|C|524
6SKF|1|Aa|4AC|525
6SKF|1|Aa|G|526
6SKF|1|Aa|U|527
6SKF|1|Aa|A|528
6SKF|1|Aa|G|529
*
6SKF|1|Aa|U|703
6SKF|1|Aa|G|704
6SKF|1|Aa|A|705
6SKF|1|Aa|G|706
6SKF|1|Aa|G|707
6SKF|1|Aa|G|708

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Aj

30S ribosomal protein S8

Chain Ao

30S ribosomal protein S12

Chain Aq

30S ribosomal protein S15

Chain As

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA