IL_6SKF_031

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAAUC*GGCUUG

Length

13 nucleotides

Bulged bases

6SKF|1|Aa|U|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|C|550
6SKF|1|Aa|G|551
6SKF|1|Aa|A|552
6SKF|1|Aa|A|553
6SKF|1|Aa|A|554
6SKF|1|Aa|U|555
6SKF|1|Aa|C|556
*
6SKF|1|Aa|G|574
6SKF|1|Aa|G|575
6SKF|1|Aa|C|576
6SKF|1|Aa|U|577
6SKF|1|Aa|U|578
6SKF|1|Aa|G|579

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ae

30S ribosomal protein S4

Chain Af

30S ribosomal protein S4e

Chain Aj

30S ribosomal protein S8

Chain As

30S ribosomal protein S17