IL_6SKF_039

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUAG*CUAUAAUC

Length

13 nucleotides

Bulged bases

6SKF|1|Aa|U|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|630
6SKF|1|Aa|G|631
6SKF|1|Aa|U|632
6SKF|1|Aa|A|633
6SKF|1|Aa|G|634
*
6SKF|1|Aa|C|645
6SKF|1|Aa|U|646
6SKF|1|Aa|A|647
6SKF|1|Aa|U|648
6SKF|1|Aa|A|649
6SKF|1|Aa|A|650
6SKF|1|Aa|U|651
6SKF|1|Aa|C|652

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ad

30S ribosomal protein S3Ae

Chain An

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA