IL_6SKF_057

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UAC(LHH)GUGA(OMG)(OMG)CGUC*GUAA

Length

18 nucleotides

Bulged bases

6SKF|1|Aa|A|1045

QA status

Modified nucleotides: LHH, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|U|1017
6SKF|1|Aa|A|1018
6SKF|1|Aa|C|1019
6SKF|1|Aa|LHH|1020
6SKF|1|Aa|G|1021
6SKF|1|Aa|U|1022
6SKF|1|Aa|G|1023
6SKF|1|Aa|A|1024
6SKF|1|Aa|OMG|1025
6SKF|1|Aa|OMG|1026
6SKF|1|Aa|C|1027
6SKF|1|Aa|G|1028
6SKF|1|Aa|U|1029
6SKF|1|Aa|C|1030
*
6SKF|1|Aa|G|1043
6SKF|1|Aa|U|1044
6SKF|1|Aa|A|1045
6SKF|1|Aa|A|1046

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ag

30S ribosomal protein S5

Chain Az

Predicted zinc-ribbon RNA-binding protein involved in translation