IL_6SKF_067

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|1353
6SKF|1|Aa|OMC|1354
6SKF|1|Aa|C|1355
6SKF|1|Aa|C|1356
*
6SKF|1|Aa|G|1446
6SKF|1|Aa|U|1447
6SKF|1|Aa|A|1448
6SKF|1|Aa|6MZ|1449
6SKF|1|Aa|C|1450

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain Bk

LSU ribosomal protein L41E