IL_6SKF_079

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_079 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.2477

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6SKF|1|BA|C|48
6SKF|1|BA|G|49
6SKF|1|BA|G|50
*
6SKF|1|BA|C|478
6SKF|1|BA|G|479

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BX

50S ribosomal protein L24