IL_6SKF_102

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAAG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_102 not in the Motif Atlas

Geometric match to IL_9E6Q_019

Geometric discrepancy: 0.2133

The information below is about IL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6SKF|1|BA|C|579
6SKF|1|BA|G|580
6SKF|1|BA|A|581
6SKF|1|BA|A|582
6SKF|1|BA|A|583
6SKF|1|BA|G|584
*
6SKF|1|BA|C|640
6SKF|1|BA|G|641
6SKF|1|BA|G|642

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BI

50S ribosomal protein L7Ae

Chain Bd

50S ribosomal protein L32e