IL_6SKF_103

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUUGACC*GUGAC

Length

13 nucleotides

Bulged bases

6SKF|1|BA|U|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_103 not in the Motif Atlas

Geometric match to IL_4CS1_002

Geometric discrepancy: 0.165

The information below is about IL_4CS1_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.6

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

6SKF|1|BA|G|585
6SKF|1|BA|G|586
6SKF|1|BA|U|587
6SKF|1|BA|U|588
6SKF|1|BA|G|589
6SKF|1|BA|A|590
6SKF|1|BA|C|591
6SKF|1|BA|C|592
*
6SKF|1|BA|G|635
6SKF|1|BA|U|636
6SKF|1|BA|G|637
6SKF|1|BA|A|638
6SKF|1|BA|C|639

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BI

50S ribosomal protein L7Ae

Chain Bd

50S ribosomal protein L32e