IL_6SKF_113

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)(OMG)AAGC*GCGAU(A2M)GCUG

Length

17 nucleotides

Bulged bases

6SKF|1|BA|G|929, 6SKF|1|BA|G|933

QA status

Modified nucleotides: 4AC, OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|C|798
6SKF|1|BA|4AC|799
6SKF|1|BA|OMG|800
6SKF|1|BA|A|801
6SKF|1|BA|A|802
6SKF|1|BA|G|803
6SKF|1|BA|C|804
*
6SKF|1|BA|G|927
6SKF|1|BA|C|928
6SKF|1|BA|G|929
6SKF|1|BA|A|930
6SKF|1|BA|U|931
6SKF|1|BA|A2M|932
6SKF|1|BA|G|933
6SKF|1|BA|C|934
6SKF|1|BA|U|935
6SKF|1|BA|G|936

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e