IL_6SKF_116

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6SKF|1|BA|G|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_116 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1509

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6SKF|1|BA|G|828
6SKF|1|BA|U|829
*
6SKF|1|BA|G|854
6SKF|1|BA|G|855
6SKF|1|BA|C|856

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BS

50S ribosomal protein L19e

Chain Bg

50S ribosomal protein L37Ae