IL_6SKF_119

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6SKF|1|BA|G|904, 6SKF|1|BA|A|916, 6SKF|1|BA|A|917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_119 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.0873

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6SKF|1|BA|G|903
6SKF|1|BA|G|904
6SKF|1|BA|G|905
*
6SKF|1|BA|C|915
6SKF|1|BA|A|916
6SKF|1|BA|A|917
6SKF|1|BA|U|918
6SKF|1|BA|C|919

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e

Chain BV

50S ribosomal protein L22

Chain Bh

50S ribosomal protein L37e