IL_6SKF_120

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(5MC)C*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_120 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1193

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6SKF|1|BA|G|943
6SKF|1|BA|5MC|944
6SKF|1|BA|C|945
*
6SKF|1|BA|G|1326
6SKF|1|BA|G|1327
6SKF|1|BA|C|1328

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e

Chain Bd

50S ribosomal protein L32e