IL_6SKF_126
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKF_126 not in the Motif Atlas
- Geometric match to IL_7A0S_029
- Geometric discrepancy: 0.1447
- The information below is about IL_7A0S_029
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.2
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKF|1|BA|G|993
6SKF|1|BA|C|994
6SKF|1|BA|A|995
6SKF|1|BA|C|996
6SKF|1|BA|U|997
*
6SKF|1|BA|A|1038
6SKF|1|BA|A|1039
6SKF|1|BA|A|1040
6SKF|1|BA|C|1041
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BJ
- 50S ribosomal protein L10e
- Chain BQ
- 50S ribosomal protein L18
- Chain BU
- 50S ribosomal protein L21e
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