IL_6SKF_138

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGU*AUUG

Length

7 nucleotides

Bulged bases

6SKF|1|BA|U|1383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_138 not in the Motif Atlas

Homologous match to IL_4V9F_046

Geometric discrepancy: 0.1412

The information below is about IL_4V9F_046

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6SKF|1|BA|C|1332
6SKF|1|BA|G|1333
6SKF|1|BA|U|1334
*
6SKF|1|BA|A|1382
6SKF|1|BA|U|1383
6SKF|1|BA|U|1384
6SKF|1|BA|G|1385

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain Bd

50S ribosomal protein L32e