IL_6SKF_163

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6SKF|1|BA|G|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_163 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0852

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6SKF|1|BA|C|1834
6SKF|1|BA|G|1835
6SKF|1|BA|U|1836
6SKF|1|BA|A|1837
6SKF|1|BA|A|1838
6SKF|1|BA|C|1839
*
6SKF|1|BA|G|1844
6SKF|1|BA|G|1845
6SKF|1|BA|A|1846
6SKF|1|BA|G|1847
6SKF|1|BA|A|1848
6SKF|1|BA|A|1849
6SKF|1|BA|G|1850

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BS

50S ribosomal protein L19e

Chain Bg

50S ribosomal protein L37Ae