IL_6SKF_164

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)G*CGAG

Length

7 nucleotides

Bulged bases

6SKF|1|BA|A|2094

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_164 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.2057

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6SKF|1|BA|C|1898
6SKF|1|BA|4AC|1899
6SKF|1|BA|G|1900
*
6SKF|1|BA|C|2092
6SKF|1|BA|G|2093
6SKF|1|BA|A|2094
6SKF|1|BA|G|2095

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Bg

50S ribosomal protein L37Ae