IL_6SKF_169

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCC*G(OMG)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_169 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1345

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6SKF|1|BA|G|1970
6SKF|1|BA|C|1971
6SKF|1|BA|C|1972
*
6SKF|1|BA|G|2009
6SKF|1|BA|OMG|2010
6SKF|1|BA|U|2011

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2