IL_6SKF_179

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGAG*C(OMU)AC(OMC)C

Length

10 nucleotides

Bulged bases

6SKF|1|BA|A|2543, 6SKF|1|BA|C|2544

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_179 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.251

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6SKF|1|BA|G|2181
6SKF|1|BA|G|2182
6SKF|1|BA|A|2183
6SKF|1|BA|G|2184
*
6SKF|1|BA|C|2541
6SKF|1|BA|OMU|2542
6SKF|1|BA|A|2543
6SKF|1|BA|C|2544
6SKF|1|BA|OMC|2545
6SKF|1|BA|C|2546

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2