IL_6SKF_191

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6SKF|1|BA|A|2449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_191 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.301

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SKF|1|BA|G|2448
6SKF|1|BA|A|2449
6SKF|1|BA|C|2450
*
6SKF|1|BA|G|2476
6SKF|1|BA|C|2477

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Bl

50S ribosomal protein L44e