IL_6SKF_196

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UCG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_196 not in the Motif Atlas

Geometric match to IL_4V9F_083

Geometric discrepancy: 0.0808

The information below is about IL_4V9F_083

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

6SKF|1|BA|U|2561
6SKF|1|BA|C|2562
6SKF|1|BA|G|2563
*
6SKF|1|BA|U|2597
6SKF|1|BA|G|2598

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L10e