IL_6SKF_200

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6SKF|1|BA|G|2680, 6SKF|1|BA|A|2681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_200 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.127

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6SKF|1|BA|C|2614
6SKF|1|BA|U|2615
6SKF|1|BA|C|2616
*
6SKF|1|BA|G|2678
6SKF|1|BA|U|2679
6SKF|1|BA|G|2680
6SKF|1|BA|A|2681
6SKF|1|BA|G|2682

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14