IL_6SKF_203

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6SKF|1|BA|A|2646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_203 not in the Motif Atlas

Homologous match to IL_4V9F_089

Geometric discrepancy: 0.1288

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

6SKF|1|BA|U|2626
6SKF|1|BA|G|2627
*
6SKF|1|BA|C|2644
6SKF|1|BA|A|2645
6SKF|1|BA|A|2646
6SKF|1|BA|G|2647

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L13

Chain Bj

50S ribosomal protein L40e